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- ISSN: 0929-8665
- E-ISSN: 1875-5305
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Identifying the Hierarchy of Dynamic Domains in Proteins Using the Data of Molecular Dynamics Simulations
- Source: Protein and Peptide Letters, Volume 17, Issue 4, Apr 2010, p. 507 - 516
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- 01 Apr 2010
Abstract
The Hierarchical Domain-Wise Alignment (HDWA) technique of domain identification in proteins is presented. HDWA is designed to identify hierarchically organized dynamic domains in proteins using the MD trajectories by eliminating systematic motions from MD trajectories recursively in a model-free manner. The method is tested on the proteins from different structural classes.
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