Current Bioinformatics - Volume 19, Issue 6, 2024

Genome assembly and annotation are crucial steps in plant genomics research as they provide valuable insights into plant genetic makeup, gene regulation, evolutionary history, and biological processes. In the emergence of high-throughput sequencing technologies, a plethora of genome assembly tools have been developed to meet the diverse needs of plant genome researchers. Choosing the most suitable tool to suit a s Read More

Background: Predicting drug-related associations is an important task in drug development and discovery. With the rapid advancement of high-throughput technologies and various biological and medical data, artificial intelligence (AI), especially progress in machine learning (ML) and deep learning (DL), has paved a new way for the development of drug-related associations prediction. Many studies have been conducted in t Read More

Background: Predicting cardiac arrest is crucial for timely intervention and improved patient outcomes. Machine learning has yielded astounding results by offering tailored prediction analyses on complex data. Despite advancements in medical expert systems, there remains a need for a comprehensive analysis of their effectiveness and limitations in cardiac arrest prediction. This need arises because there are not enoug Read More

Background: Identifying differentially methylated region (DMR) is a basic but important task in epigenomics, which can help investigate the mechanisms of diseases and provide methylation biomarkers for screening diseases. A set of methods have been proposed to identify DMRs from methylation array data. However, it lacks effective metrics to characterize different DMR sets and enable a straight way for comparison. Read More

Background: Krüppel-like factors (KLFs) are a family of transcription factors containing zinc fingers that regulate various cellular processes. KLF proteins are associated with human diseases, such as cancer, cardiovascular diseases, and metabolic disorders. The KLF family consists of 18 members with diverse expression profiles across numerous tissues. Accurate identification and annotation of KLF proteins is crucial, giv Read More