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A consensus QSAR combining traditional 2D-QSAR with CoMFA and CoMSIA was developed for N, N'- bis substituted guanidines reported with NMDA receptor ion channel blocker activity. Two new statistics r2wμp (leverage weighted mean r2pred) and r2μp (mean r2pred) were defined. A slight improvement in predictive ability was observed for all the combinations while using r2wμp (0.630, 0.691, 0.672) rather than r2μp (0.622, 0.644, 0.658) however the approach has to be validated using more datasets.