Current Topics in Medicinal Chemistry - Volume 3, Issue 11, 2003

The development of computational tools for the prediction of passive transport is reviewed with particular reference to four diverse approaches: the rule-of-5, polar surface area, Volsurf and Abraham's General Solvation Equation. To illustrate the current state of the art, several examples of the application of in silico methods in drug design projects drawn from the recent medicinal chemistry literature are presented. In concl Read More

Drug discovery is a long, arduous process broadly grouped into disease target identification, target validation, high-throughput identification of “hits” and “leads”, lead optimization, and pre-clinical and clinical evaluation. Each area is a vast discipline in itself. However, all but the first two stages involve, to varying degrees, the characterization of absorption, distribution, metabolism, excretion, (ADME), and toxicity (T) of the Read More

Cytochromes P450 (Cyt P450s) constitute the most important biotransformation enzymes involved in the biotransformation of drugs and other xenobiotics. Because drug metabolism by Cyt P450s plays such an important role in the disposition and in the pharmacological and toxicological effects of drugs, early consideration of ADME-properties is increasingly seen as essential for the discovery and the development of new Read More

An overview of the combined quantum mechanical / molecular mechanical (QM / MM) approach and its application to studies of biotransformation enzymes and drug metabolism is given. Theoretical methods to simulate enzymatic reactions have rapidly developed during the last decade. In particular, QM / MM methods provide detailed insights into enzyme catalyzed reactions, which can be extremely valuable in complement Read More

Simulation models for the prediction of pharmacokinetics in humans and other mammalian species, which are based on the physiology and mechanistic models of absorption, distribution, metabolism and elimination are reviewed. The structure of such models is explained with reference to papers describing the mathematical details and alternative representations of organ flow and distribution. Approaches to the modelli Read More

A “snapshot” of current medicinal chemistry work on bioavailability is drawn from issues of J. Med. Chem. covering the time period between September 2001 and September 2002. An exhaustive compilation of reported absolute oral bioavailability (F) values for this period is included, covering 34 structural series and 107 distinct compounds, with data for multiple species in many cases. This is supplemented with a disc Read More

Mutagenicity and carcinogenicity are chronic effects of primary concern for human health. A unifying approach to their mechanistic understanding is the recognition that many chemicals provoke both effects by electrophilic attack to the biological macromolecules, as such or after metabolism (genotoxic carcinogenicity). QSARs of individual classes of genotoxic carcinogens have contributed to the elucidation of the chemical det Read More