Recent Directions in Compressing Next Generation Sequencing Data

Malay Bhattacharyya; Manas Bhattacharyya; Sanghamitra Bandyopadhyay

doi:10.2174/157489312799304422

ISSN: 1574-8936
E-ISSN:

Recent Directions in Compressing Next Generation Sequencing Data
By Malay Bhattacharyya, Manas Bhattacharyya and Sanghamitra Bandyopadhyay
Source: Current Bioinformatics, Volume 7, Issue 1, Mar 2012, p. 2 - 6
DOI: https://doi.org/10.2174/157489312799304422
- Available online: 01 Mar 2012

Abstract

Bioinformatics research in the last three decades has contributed quite a large number of methodologies for compressing genomic sequence data. However, recent progress in the next generation sequencing (NGS) techniques requires the development of more effective compression methods. In this review paper, a comprehensive overview of the state-of-the-art DNA sequence compression techniques for handling the exponential growth of DNA sequence data, emerging from NGS techniques, is provided.

Article metrics loading...

/content/journals/cbio/10.2174/157489312799304422

2012-03-01

2024-10-16

From This Site

/content/journals/cbio/10.2174/157489312799304422

dcterms_title,dcterms_subject,pub_keyword

-contentType:Contributor -contentType:Concept -contentType:Institution

10

5

Full text loading...

/content/journals/cbio/10.2174/157489312799304422

Article Type: Research Article

Keyword(s): Arabidopsis thaliana; Cloud computing; compression ratio; DNA sequence data; genetic disease; genome; next generation sequencing; NGS techniques; sequence compression; single nucleotide polymorphisms

Most Cited Most Cited RSS feed

- Bioinformatics Tools for Mass Spectroscopy-Based Metabolomic Data Processing and Analysis
  
  Authors: Masahiro Sugimoto, Masato Kawakami, Martin Robert, Tomoyoshi Soga and Masaru Tomita
- Distance-based Support Vector Machine to Predict DNA N6- methyladenine Modification
  
  Authors: Haoyu Zhang, Quan Zou, Ying Ju, Chenggang Song and Dong Chen
- A Review on the Recent Developments of Sequence-based Protein Feature Extraction Methods
  
  Authors: Jun Zhang and Bin Liu
- Molecular Genetic Markers: Discovery, Applications, Data Storage and Visualisation
  
  Authors: Chris Duran, Nikki Appleby, David Edwards and Jacqueline Batley
- A Brief Survey of Machine Learning Methods in Protein Sub-Golgi Localization
  
  Authors: Wuritu Yang, Xiao-Juan Zhu, Jian Huang, Hui Ding and Hao Lin
- Cancer Diagnosis Through IsomiR Expression with Machine Learning Method
  
  Authors: Zhijun Liao, Dapeng Li, Xinrui Wang, Lisheng Li and Quan Zou
- The Advances and Challenges of Deep Learning Application in Biological Big Data Processing
  
  Authors: Li Peng, Manman Peng, Bo Liao, Guohua Huang, Weibiao Li and Dingfeng Xie
- Gene Expression Profile Classification: A Review
  
  Authors: Musa H. Asyali, Dilek Colak, Omer Demirkaya and Mehmet S. Inan
- Relevance of Molecular Docking Studies in Drug Designing
  
  Authors: Ritu Jakhar, Mehak Dangi, Alka Khichi and Anil K. Chhillar
- MRMD2.0: A Python Tool for Machine Learning with Feature Ranking and Reduction
  
  Authors: Shida He, Fei Guo, Quan Zou and HuiDing
More Less

Recent Directions in Compressing Next Generation Sequencing Data

Abstract

Most Read This Month

Most Cited Most Cited RSS feed